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Source database (GenBank or RefSeq) File type

AaegL5.0

Organism name:

Aedes aegypti (yellow fever mosquito)

Infraspecific name:

Strain: LVP_AGWG

Sex:

male

BioSample:

SAMN07177802

BioProject:

PRJNA318737

Submitter:

Aedes aegypti Genome Working Group (AGWG)

Date:

2017/06/22

Assembly type:

haploid-with-alt-loci

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002204515.1 (latest)

RefSeq assembly accession:

GCF_002204515.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 4224 unlocalized and unplaced scaffolds

Data displayed for RefSeq version

WGS Project:

NIGP01

Assembly method:

Falcon_UNZIP v. 0.7.0

Expected final version:

yes

Genome coverage:

110.0x

Sequencing technology:

PacBio

IDs: 1141061 [UID] 4634188 [GenBank] 4674878 [RefSeq]

See Genome Information for Aedes aegypti

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002204515.1	≠	GCF_002204515.2	AaegL5.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome assembly generated by the Aedes aegypti Genome Working Group (AGWG). PacBio reads were assembled by FALCON-Unzip, scaffolded by Hi-C, and gap-filling and polishing performed by PBJ and arrow

This is a phased diploid assembly of Aedes aegypti. The contigs ... of the primary assembly are NIGP01000001-NIGP01002309. The alternative haploid contigs (haplotigs) are located in NIGP01002310-NIGP01006533.  more

Global statistics*

Number of regions with alternate loci or patches	3,818
Total sequence length	1,278,715,314
Total ungapped length	1,278,692,379
Gaps between scaffolds	0
Number of scaffolds	2,309
Scaffold N50	409,777,670
Scaffold L50	2
Number of contigs	2,538
Contig N50	11,758,062
Contig L50	30
Total number of chromosomes and plasmids	3
Number of component sequences (WGS or clone)	2,309

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM008043.1	=	NC_035107.1	0
Chromosome 2	CM008044.1	=	NC_035108.1	0
Chromosome 3	CM008045.1	=	NC_035109.1	0
unplaced	n/a	n/a	n/a	2,306

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,278,715,314	2,309	1,278,692,379	409,777,670	229
Chromosome 1	310,827,022	1	310,820,022	310,827,022	70
Chromosome 2	474,425,716	1	474,420,516	474,425,716	52
Chromosome 3	409,777,670	1	409,772,535	409,777,670	51
unplaced	83,684,906	2,306	83,679,306	40,105	56

Assembly

Genome Assembly

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Download Assembly

AaegL5.0

See Genome Information for Aedes aegypti

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

Global statistics*

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear